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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
3
DNase-seq
3
pCHi-C
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
Assay category
41
DNA binding
5
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
25
histone
25
histone modification
13
broad histone mark
12
narrow histone mark
10
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
25
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
4
March, 2020
1
October, 2017
Available data
44
bam
31
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
24
fastq
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
53
Homo sapiens
Biosample type
31
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
31
hg19
28
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
DNase-seq
pCHi-C
Hi-C
WGBS
ATAC-seq
FAIRE-seq
tissue
spleen
20
1
1
2
1
islet of Langerhans
4
gastric (mucosa of stomach)
1
ovary
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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