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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
8
ATAC-seq
3
DNase-seq
1
RRBS
Assay category
57
Transcription
11
DNA accessibility
DNA binding
1
DNA methylation
Date released
60
February, 2021
5
July, 2019
3
June, 2019
1
May, 2021
Available data
68
bam
60
bigWig
57
tsv
11
bed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
69
Homo sapiens
Biosample type
tissue
60
cell line
8
primary cell
1
in vitro differentiated cells
Organ
380
epithelium
340
pancreas
74
vasculature
71
blood vessel
69
heart
62
artery
58
connective tissue
33
liver
30
kidney
15
embryo
12
brain
9
blood
9
bodily fluid
5
vein
4
musculature of body
3
adipose tissue
2
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
69
AMP
Genome assembly (visualization)
68
GRCh38
68
hg19
Lab
69
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
tissue
BIOSAMPLE
ASSAY
69 results
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total RNA-seq
ATAC-seq
DNase-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
cardiac fibroblast
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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