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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
43
DNA accessibility
DNA binding
4
DNA methylation
3
3D chromatin structure
Date released
92
August, 2021
36
February, 2023
8
February, 2021
5
March, 2020
4
July, 2019
3
February, 2020
1
October, 2019
Available data
168
tsv
118
bam
bigWig
77
bed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
30
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
149
Homo sapiens
Biosample type
140
tissue
8
cell line
1
primary cell
Organ
266
pancreas
210
kidney
195
epithelium
149
heart
101
bone element
58
vasculature
57
blood vessel
52
eye
49
liver
47
artery
36
connective tissue
20
lung
18
brain
16
musculature of body
16
skeleton
13
limb
12
adipose tissue
8
blood
8
bodily fluid
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
149
AMP
Genome assembly (visualization)
43
GRCh38
13
hg19
Lab
149
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bigWig
BIOSAMPLE
ASSAY
149 results
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single cell RNA-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
1
heart left ventricle
18
1
1
1
2
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
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cell line
smooth muscle cell of the coronary artery
8
primary cell
cardiac fibroblast
1
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