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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
total RNA-seq
30
DNase-seq
12
ATAC-seq
6
WGBS
1
small RNA-seq
Assay category
DNA binding
70
Transcription
42
DNA accessibility
6
DNA methylation
Date released
60
February, 2021
30
June, 2019
21
July, 2019
3
May, 2021
2
March, 2020
2
October, 2019
Available data
168
tsv
118
bam
110
bigWig
77
bed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
30
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
118
Homo sapiens
Biosample type
60
cell line
50
tissue
7
primary cell
1
in vitro differentiated cells
Organ
491
connective tissue
491
pancreas
405
adipose tissue
188
epithelium
171
liver
118
heart
92
kidney
83
vasculature
81
blood vessel
68
artery
66
bone element
49
limb
47
brain
40
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
3
vein
1
pericardium
Project
118
AMP
Genome assembly (visualization)
118
GRCh38
109
hg19
Lab
118
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
118 results
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total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
tissue
heart
4
18
1
1
heart left ventricle
3
3
2
2
right atrium auricular region
2
2
1
heart right ventricle
1
1
2
coronary artery
2
1
+ See 4 more…
primary cell
cardiac fibroblast
3
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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