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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
ChIP-seq
Assay category
96
Transcription
35
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Date released
92
August, 2021
36
February, 2023
5
March, 2020
4
July, 2019
3
February, 2020
1
October, 2019
Available data
168
tsv
bam
110
bigWig
77
bed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
30
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
141
Homo sapiens
Biosample type
140
tissue
1
primary cell
Organ
237
pancreas
210
kidney
207
epithelium
141
heart
93
bone element
68
liver
52
eye
51
vasculature
50
blood vessel
40
connective tissue
39
artery
21
brain
20
lung
17
musculature of body
13
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
141
AMP
Genome assembly (visualization)
35
GRCh38
5
hg19
Lab
141
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
141 results
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single cell RNA-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
1
heart left ventricle
18
1
1
1
2
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
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primary cell
cardiac fibroblast
1
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