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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
5
pCHi-C
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
166
Transcription
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Date released
92
August, 2021
60
February, 2021
36
February, 2023
30
June, 2019
25
July, 2019
8
March, 2020
4
May, 2021
3
February, 2020
3
October, 2019
Available data
169
tsv
118
bam
110
bigWig
77
bed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
30
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
261
Homo sapiens
Biosample type
192
tissue
60
cell line
8
primary cell
1
in vitro differentiated cells
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
260
AMP
1
T1D
Genome assembly (visualization)
153
GRCh38
114
hg19
Lab
260
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
261 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
coronary artery
1
36
2
heart left ventricle
18
3
2
3
4
1
1
1
heart
1
4
18
1
1
1
heart right ventricle
17
1
1
2
1
1
right cardiac atrium
18
1
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
cardiac fibroblast
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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