Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
47
ATAC-seq
30
DNase-seq
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
94
DNA binding
77
DNA accessibility
3
3D chromatin structure
2
DNA methylation
1
Transcription
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
57
April, 2019
36
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
6
July, 2019
6
October, 2019
2
March, 2020
Available data
205
bam
178
bigWig
tsv
151
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
177
Homo sapiens
Biosample type
154
tissue
14
cell line
9
primary cell
Organ
612
liver
484
pancreas
330
kidney
327
epithelium
260
brain
200
connective tissue
177
heart
166
vasculature
160
blood vessel
114
limb
101
bone element
86
musculature of body
84
adipose tissue
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
23
embryo
22
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
177
AMP
Genome assembly (visualization)
150
GRCh38
118
hg19
Lab
177
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
WGBS
files.file_type!
tsv
BIOSAMPLE
ASSAY
177 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
single cell RNA-seq
tissue
coronary artery
5
36
2
heart left ventricle
35
2
3
1
1
heart
14
18
1
1
heart right ventricle
13
1
1
right atrium auricular region
10
1
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
See all biosamples
Download