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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
89
ChIP-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
89
DNA binding
74
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
18
control
11
transcription factor
5
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
36
February, 2023
27
June, 2019
21
May, 2019
14
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
194
bam
169
bigWig
165
tsv
145
bed narrowPeak
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
333
Homo sapiens
Biosample type
265
tissue
66
cell line
2
primary cell
Organ
895
pancreas
786
liver
connective tissue
485
adipose tissue
477
epithelium
354
kidney
345
heart
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
333
AMP
Genome assembly (visualization)
211
GRCh38
179
hg19
Lab
333
AMP-T2D consortium
assay_title!
WGBS
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
333 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
2
3
1
1
1
coronary artery
5
1
36
2
heart
1
14
4
18
1
1
heart right ventricle
17
13
1
1
1
1
right cardiac atrium
18
6
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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