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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
83
ChIP-seq
39
ATAC-seq
27
DNase-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
83
DNA binding
66
DNA accessibility
16
Transcription
9
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
57
April, 2019
35
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
133
bed narrowPeak
132
bam
117
bigWig
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
19
tsv
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
180
Homo sapiens
Biosample type
180
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
360
liver
265
brain
235
kidney
180
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
180
AMP
Genome assembly (visualization)
151
GRCh38
113
hg19
Lab
180
AMP-T2D consortium
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
180 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
2
3
3
4
1
1
1
coronary artery
5
36
2
1
heart
14
18
4
1
1
1
heart right ventricle
13
1
1
2
1
1
right atrium auricular region
10
1
2
3
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