Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
total RNA-seq
30
DNase-seq
12
ATAC-seq
6
WGBS
1
small RNA-seq
Assay category
93
DNA binding
42
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
61
histone
61
histone modification
37
broad histone mark
24
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
56
April, 2019
35
June, 2019
21
May, 2019
14
February, 2021
11
July, 2019
5
October, 2019
Available data
151
bed narrowPeak
142
bam
115
bigWig
96
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
142
Homo sapiens
Biosample type
120
tissue
14
cell line
8
primary cell
Organ
522
liver
353
pancreas
241
epithelium
238
brain
142
heart
133
kidney
127
vasculature
126
connective tissue
122
blood vessel
110
limb
60
blood
60
bodily fluid
53
musculature of body
48
artery
47
adipose tissue
38
nerve
24
spleen
22
embryo
20
vein
18
ureter
8
bone element
8
skeleton
7
eye
1
pituitary gland
Project
142
AMP
Genome assembly (visualization)
122
GRCh38
113
hg19
Lab
142
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
142 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
heart left ventricle
34
3
2
2
heart
14
18
1
1
heart right ventricle
13
1
2
right atrium auricular region
10
2
1
coronary artery
5
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
See all biosamples
Download