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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
93
single cell RNA-seq
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
4
pCHi-C
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
94
DNA binding
94
Transcription
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
42
April, 2019
36
February, 2023
33
June, 2019
25
May, 2024
15
July, 2019
15
May, 2019
14
February, 2021
6
March, 2020
4
October, 2019
Available data
151
bed narrowPeak
118
bam
115
bigWig
97
tsv
72
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
282
Homo sapiens
Biosample type
261
tissue
14
cell line
7
primary cell
Organ
542
liver
476
pancreas
344
epithelium
281
heart
279
kidney
177
connective tissue
152
brain
149
vasculature
144
blood vessel
100
limb
97
bone element
81
adipose tissue
79
artery
77
musculature of body
68
blood
68
bodily fluid
39
eye
30
nerve
23
spleen
20
lung
18
ureter
16
vein
15
embryo
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
282
AMP
Genome assembly (visualization)
158
GRCh38
94
hg19
Lab
257
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
assay_title!
total RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
26
18
2
3
4
1
1
1
left cardiac atrium
25
18
1
coronary artery
3
36
2
heart
10
1
18
1
1
1
heart right ventricle
9
17
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
3
3
1
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