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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
94
DNA binding
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
57
April, 2019
21
May, 2019
6
February, 2021
6
October, 2019
5
June, 2019
2
March, 2020
Available data
93
bam
74
bed narrowPeak
74
bigWig
64
bigBed narrowPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
97
Homo sapiens
Biosample type
86
tissue
6
cell line
5
primary cell
Organ
556
liver
227
pancreas
221
brain
154
connective tissue
137
epithelium
107
vasculature
104
blood vessel
97
heart
73
adipose tissue
70
limb
60
blood
60
bodily fluid
53
kidney
45
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
19
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
97
AMP
Genome assembly (visualization)
77
hg19
73
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
Hi-C
tissue
heart left ventricle
35
1
heart
14
1
heart right ventricle
13
1
right atrium auricular region
10
right cardiac atrium
6
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
5
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