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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
4
pCHi-C
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
138
DNA binding
3
3D chromatin structure
Target of assay
101
histone
101
histone modification
57
broad histone mark
44
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
21
May, 2019
10
October, 2019
6
February, 2021
5
June, 2019
2
March, 2020
Available data
114
bed narrowPeak
114
bigWig
93
bam
64
bigBed narrowPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
141
Homo sapiens
Biosample type
130
tissue
6
cell line
5
primary cell
Organ
556
liver
227
pancreas
221
brain
154
connective tissue
137
epithelium
137
heart
107
vasculature
104
blood vessel
73
adipose tissue
70
limb
60
blood
60
bodily fluid
53
kidney
45
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
19
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
141
AMP
Genome assembly (visualization)
113
GRCh38
77
hg19
Lab
101
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
141 results
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Clear Filters
ChIP-seq
Hi-C
tissue
left cardiac atrium
40
heart left ventricle
35
1
heart
14
1
heart right ventricle
13
1
right atrium auricular region
10
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
5
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