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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
20
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
WGBS
1
RRBS
Assay category
96
Transcription
20
DNA binding
3
3D chromatin structure
3
DNA methylation
Target of assay
19
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
6
May, 2019
5
March, 2020
3
February, 2020
3
July, 2019
2
February, 2021
1
February, 2023
1
June, 2019
1
October, 2019
Available data
98
tsv
19
bam
3
bedpe bed3+
3
hic
2
tagAlign
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigWig
Organism
125
Homo sapiens
Biosample type
122
tissue
2
cell line
1
primary cell
Organ
282
pancreas
260
liver
196
epithelium
141
kidney
125
heart
110
connective tissue
68
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
42
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
bone element
9
spleen
8
skeleton
6
embryo
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
125
AMP
Genome assembly (visualization)
GRCh38
183
hg19
Lab
125
AMP-T2D consortium
Audit category:
inconsistent ontology term
assembly!
GRCh38
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
125 results
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single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
WGBS
RRBS
tissue
heart left ventricle
18
7
1
1
2
1
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
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cell line
smooth muscle cell of the coronary artery
2
primary cell
cardiac fibroblast
1
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