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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
19
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
19
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
18
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
February, 2021
June, 2019
1
February, 2023
1
October, 2019
Available data
98
tsv
18
bam
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
tagAlign
1
bed narrowPeak
1
bigWig
Organism
125
Homo sapiens
Biosample type
122
tissue
2
cell line
1
primary cell
Organ
311
pancreas
260
liver
228
epithelium
148
kidney
125
heart
115
connective tissue
93
bone element
69
brain
67
adipose tissue
54
eye
45
vasculature
43
blood vessel
41
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
Genome assembly (visualization)
GRCh38
158
hg19
Lab
125
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
month_released!
June, 2019
BIOSAMPLE
ASSAY
125 results
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single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
heart left ventricle
18
7
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
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cell line
smooth muscle cell of the coronary artery
2
primary cell
cardiac fibroblast
1
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