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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
69
total RNA-seq
27
DNase-seq
12
ATAC-seq
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
70
Transcription
39
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Date released
60
February, 2021
27
June, 2019
17
July, 2019
4
March, 2020
3
May, 2021
3
October, 2019
Available data
109
bam
101
bigWig
70
tsv
39
bed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
27
bigBed narrowPeak
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
114
Homo sapiens
Biosample type
60
cell line
46
tissue
7
primary cell
1
in vitro differentiated cells
Organ
513
connective tissue
495
pancreas
407
adipose tissue
210
epithelium
196
liver
114
heart
90
kidney
86
vasculature
83
blood vessel
70
bone element
68
artery
48
limb
46
musculature of body
41
brain
32
eye
18
ureter
14
embryo
12
skeleton
7
nerve
5
vein
2
pericardium
2
spleen
1
blood
1
bodily fluid
Project
114
AMP
Genome assembly (visualization)
153
GRCh38
114
hg19
Lab
114
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
tissue
heart
4
16
1
1
heart left ventricle
3
3
2
1
1
right atrium auricular region
2
2
1
coronary artery
2
1
heart right ventricle
1
1
1
+ See 3 more…
primary cell
cardiac fibroblast
2
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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