Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
total RNA-seq
27
DNase-seq
12
ATAC-seq
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
74
DNA binding
39
DNA accessibility
3
3D chromatin structure
2
DNA methylation
1
Transcription
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
12
transcription factor
6
RNA binding protein
Date released
47
April, 2019
30
June, 2019
15
May, 2019
12
February, 2021
7
July, 2019
6
October, 2019
2
March, 2020
Available data
113
bam
113
bed narrowPeak
106
bigWig
91
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
4
tagAlign
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
1
tsv
Organism
119
Homo sapiens
Biosample type
101
tissue
12
cell line
6
primary cell
Organ
466
liver
328
pancreas
235
epithelium
159
brain
121
connective tissue
119
heart
118
kidney
107
vasculature
101
blood vessel
92
limb
69
musculature of body
55
blood
55
bodily fluid
39
artery
34
eye
30
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
119
AMP
Genome assembly (visualization)
157
GRCh38
119
hg19
Lab
119
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
119 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
29
3
2
1
1
heart
12
16
1
1
heart right ventricle
11
1
1
right atrium auricular region
7
2
1
coronary artery
3
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
3
2
1
See all biosamples
Download