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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
59
ChIP-seq
35
ATAC-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
Assay category
96
Transcription
59
DNA binding
38
DNA accessibility
8
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
19
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
4
June, 2019
3
February, 2020
3
March, 2020
2
February, 2021
Available data
98
tsv
78
bed narrowPeak
49
bigWig
28
bam
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
204
Homo sapiens
Biosample type
200
tissue
2
cell line
2
primary cell
Organ
262
pancreas
218
kidney
204
heart
183
epithelium
166
liver
121
brain
90
connective tissue
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
6
embryo
5
bone element
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
204
AMP
Genome assembly (visualization)
262
GRCh38
hg19
Lab
164
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
204 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
2
primary cell
cardiac fibroblast
1
1
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