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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
8
ATAC-seq
7
ChIP-seq
2
DNase-seq
Assay category
56
Transcription
10
DNA accessibility
7
DNA binding
Target of assay
4
transcription factor
3
control
Date released
66
February, 2021
4
July, 2019
3
June, 2019
Available data
73
bam
62
bigWig
56
tsv
14
bed narrowPeak
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
73
Homo sapiens
Biosample type
tissue
66
cell line
7
primary cell
in vitro differentiated cells
Organ
414
liver
399
epithelium
357
pancreas
102
vasculature
97
blood vessel
73
heart
69
blood
69
bodily fluid
68
artery
32
kidney
26
connective tissue
22
vein
21
brain
8
embryo
6
musculature of body
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
73
AMP
Genome assembly (visualization)
70
GRCh38
69
hg19
Lab
73
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
biosample_type!
in vitro differentiated cells
tissue
BIOSAMPLE
ASSAY
73 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
cardiac fibroblast
1
2
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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