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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
79
ChIP-seq
27
DNase-seq
16
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
110
Transcription
79
DNA binding
30
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
37
broad histone mark
21
narrow histone mark
15
control
6
transcription factor
4
RNA binding protein
Date released
92
August, 2021
57
April, 2019
28
June, 2019
21
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
2
February, 2020
2
May, 2021
1
February, 2023
Available data
129
bam
115
bigWig
112
tsv
94
bed narrowPeak
85
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
234
Homo sapiens
Biosample type
229
tissue
5
primary cell
in vitro differentiated cells
Organ
862
pancreas
775
liver
572
connective tissue
489
adipose tissue
414
epithelium
346
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
234
AMP
Genome assembly (visualization)
114
GRCh38
110
hg19
Lab
234
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
artery
BIOSAMPLE
ASSAY
234 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
3
4
2
1
1
1
heart
1
14
18
4
1
1
1
heart right ventricle
17
13
1
1
2
1
1
right cardiac atrium
18
6
1
1
left cardiac atrium
18
1
+ See 9 more…
primary cell
cardiac fibroblast
1
2
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
See all biosamples
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