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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
47
ATAC-seq
29
DNase-seq
8
WGBS
3
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
90
DNA binding
76
DNA accessibility
9
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
19
control
11
transcription factor
5
RNA binding protein
Date released
57
April, 2019
36
February, 2023
30
June, 2019
21
May, 2019
14
February, 2021
13
July, 2019
6
October, 2019
2
March, 2020
Available data
206
bam
180
bigWig
tsv
147
bed narrowPeak
90
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
179
Homo sapiens
Biosample type
162
tissue
14
cell line
3
primary cell
Organ
616
liver
487
pancreas
313
epithelium
312
kidney
258
brain
188
connective tissue
179
heart
167
vasculature
162
blood vessel
114
limb
89
adipose tissue
83
artery
78
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
vein
19
embryo
19
lung
18
ureter
17
bone element
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
179
AMP
Genome assembly (visualization)
152
GRCh38
113
hg19
Lab
179
AMP-T2D consortium
Audit category:
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tsv
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
right atrium auricular region
10
1
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
1
2
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