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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
47
ATAC-seq
8
WGBS
3
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
130
DNA binding
47
DNA accessibility
9
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
19
control
16
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
21
May, 2019
14
February, 2021
13
July, 2019
6
October, 2019
2
March, 2020
1
June, 2019
Available data
220
bigWig
206
bam
187
bed narrowPeak
tsv
90
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
190
Homo sapiens
Biosample type
175
tissue
14
cell line
1
primary cell
Organ
553
liver
480
pancreas
292
epithelium
235
kidney
220
brain
190
heart
180
connective tissue
151
vasculature
149
blood vessel
87
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
52
eye
46
musculature of body
36
nerve
23
spleen
19
embryo
19
lung
18
vein
17
bone element
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
190
AMP
Genome assembly (visualization)
163
GRCh38
87
hg19
Lab
150
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
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tsv
bigBed broadPeak
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
4
1
1
coronary artery
5
36
left cardiac atrium
40
heart
14
1
1
1
heart right ventricle
13
2
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
1
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