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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
47
ATAC-seq
29
DNase-seq
8
WGBS
3
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
130
DNA binding
76
DNA accessibility
9
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
19
control
16
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
30
June, 2019
21
May, 2019
14
February, 2021
13
July, 2019
6
October, 2019
2
March, 2020
Available data
220
bigWig
206
bam
187
bed narrowPeak
tsv
90
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
219
Homo sapiens
Biosample type
202
tissue
14
cell line
3
primary cell
Organ
616
liver
487
pancreas
313
epithelium
312
kidney
258
brain
219
heart
188
connective tissue
167
vasculature
162
blood vessel
114
limb
89
adipose tissue
83
artery
78
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
vein
embryo
19
lung
18
ureter
17
bone element
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
219
AMP
Genome assembly (visualization)
192
GRCh38
113
hg19
Lab
179
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
tsv
organ_slims!
embryo
BIOSAMPLE
ASSAY
219 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
1
2
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