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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
48
ATAC-seq
30
DNase-seq
10
WGBS
3
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
150
DNA binding
78
DNA accessibility
11
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
101
histone
101
histone modification
61
broad histone mark
40
narrow histone mark
27
control
22
transcription factor
10
RNA binding protein
3
other context
3
other post-translational modification
Date released
57
April, 2019
40
May, 2024
36
February, 2023
30
June, 2019
21
May, 2019
14
February, 2021
13
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
6
October, 2019
2
March, 2020
1
October, 2017
Available data
236
bigWig
230
bam
201
bed narrowPeak
tsv
103
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
24
fastq
9
bed bedMethyl
9
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
243
Homo sapiens
Biosample type
226
tissue
14
cell line
3
primary cell
Organ
616
liver
487
pancreas
313
epithelium
312
kidney
258
brain
219
heart
188
connective tissue
167
vasculature
162
blood vessel
114
limb
89
adipose tissue
83
artery
78
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
vein
19
embryo
19
lung
18
ureter
17
bone element
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
243
AMP
Genome assembly (visualization)
208
GRCh38
127
hg19
Lab
203
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
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tsv
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
1
spleen
20
1
1
2
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
1
2
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