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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
single cell RNA-seq
1
small RNA-seq
Assay category
129
DNA binding
74
DNA accessibility
71
Transcription
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
22
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
215
bigWig
200
bam
185
bed narrowPeak
88
bigBed narrowPeak
73
tsv
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
289
Homo sapiens
Biosample type
221
tissue
66
cell line
2
primary cell
Organ
863
pancreas
755
liver
connective tissue
489
adipose tissue
429
epithelium
295
heart
283
brain
229
vasculature
224
blood vessel
201
kidney
139
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
289
AMP
Genome assembly (visualization)
257
GRCh38
179
hg19
Lab
249
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2021
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
289 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
single cell RNA-seq
small RNA-seq
tissue
heart left ventricle
35
3
2
3
4
1
1
1
coronary artery
5
1
36
2
left cardiac atrium
40
1
heart
14
4
18
1
1
1
1
heart right ventricle
13
1
1
2
1
1
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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