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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
8
ATAC-seq
7
ChIP-seq
2
DNase-seq
Assay category
57
Transcription
10
DNA accessibility
7
DNA binding
Target of assay
4
transcription factor
3
control
Date released
66
February, 2021
4
July, 2019
3
June, 2019
1
May, 2021
Available data
74
bam
63
bigWig
57
tsv
14
bed narrowPeak
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
74
Homo sapiens
Biosample type
tissue
66
cell line
7
primary cell
1
in vitro differentiated cells
Organ
429
liver
418
epithelium
360
pancreas
119
connective tissue
102
vasculature
97
blood vessel
74
heart
69
blood
69
bodily fluid
68
artery
32
kidney
31
embryo
22
vein
brain
6
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
74
AMP
Genome assembly (visualization)
71
GRCh38
70
hg19
Lab
74
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
brain
biosample_type!
tissue
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
cardiac fibroblast
1
2
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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