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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ATAC-seq
30
ChIP-seq
29
DNase-seq
8
WGBS
3
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
76
DNA accessibility
30
DNA binding
9
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
60
histone
histone modification
37
broad histone mark
23
narrow histone mark
19
control
11
transcription factor
5
RNA binding protein
Date released
36
February, 2023
30
June, 2019
15
April, 2019
14
February, 2021
13
July, 2019
8
May, 2019
2
March, 2020
1
October, 2019
Available data
tsv
147
bam
120
bigWig
87
bed narrowPeak
36
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
119
Homo sapiens
Biosample type
102
tissue
14
cell line
3
primary cell
Organ
513
liver
348
pancreas
284
kidney
236
epithelium
119
heart
118
connective tissue
96
vasculature
92
blood vessel
73
brain
68
blood
68
bodily fluid
65
limb
63
artery
57
adipose tissue
53
eye
52
musculature of body
19
lung
18
spleen
18
ureter
17
bone element
16
skeleton
14
nerve
9
embryo
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
119
AMP
Genome assembly (visualization)
93
GRCh38
53
hg19
Lab
119
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
histone modification
files.file_type!
tsv
BIOSAMPLE
ASSAY
119 results
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ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
coronary artery
36
3
2
heart
2
18
1
1
1
heart left ventricle
2
11
3
4
1
1
right atrium auricular region
1
4
2
heart right ventricle
2
1
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
6
primary cell
cardiac fibroblast
1
2
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