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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
27
DNase-seq
21
ChIP-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
111
Transcription
30
DNA accessibility
21
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
histone modification
37
broad histone mark
21
narrow histone mark
15
control
6
transcription factor
4
RNA binding protein
Date released
92
August, 2021
28
June, 2019
21
July, 2019
15
April, 2019
7
March, 2020
5
May, 2019
3
May, 2021
3
October, 2019
2
February, 2020
1
February, 2023
Available data
113
tsv
73
bam
58
bigWig
36
bed narrowPeak
33
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
177
Homo sapiens
Biosample type
171
tissue
5
primary cell
1
in vitro differentiated cells
Organ
726
pancreas
687
liver
595
connective tissue
458
adipose tissue
356
epithelium
303
kidney
287
heart
164
vasculature
160
blood vessel
artery
98
brain
75
bone element
72
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
21
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
177
AMP
Genome assembly (visualization)
58
GRCh38
53
hg19
Lab
177
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
histone modification
organ_slims!
artery
BIOSAMPLE
ASSAY
177 results
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single cell RNA-seq
DNase-seq
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
3
11
3
4
2
1
1
1
heart
1
18
2
4
1
1
1
heart right ventricle
17
1
2
1
2
1
1
right cardiac atrium
18
1
1
1
left cardiac atrium
18
1
+ See 9 more…
primary cell
cardiac fibroblast
2
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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