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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
Assay category
98
DNA binding
Target of assay
354
transcription factor
198
histone modification
197
histone
127
control
99
broad histone mark
98
narrow histone mark
82
recombinant protein
68
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
27
May, 2020
15
April, 2019
15
May, 2024
13
August, 2017
7
December, 2017
7
November, 2017
6
May, 2019
4
August, 2021
4
October, 2019
Available data
90
bigWig
89
bed narrowPeak
72
bam
40
tagAlign
34
bigBed narrowPeak
19
fastq
6
bed broadPeak
6
bigBed broadPeak
2
bed bed3+
Organism
98
Homo sapiens
Biosample type
82
tissue
9
cell line
5
in vitro differentiated cells
2
primary cell
Organ
115
brain
67
pancreas
60
liver
39
epithelium
38
heart
29
connective tissue
26
vasculature
25
blood vessel
15
limb
13
kidney
12
adipose tissue
10
musculature of body
8
nerve
6
artery
6
embryo
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
98
AMP
Genome assembly (visualization)
78
GRCh38
75
hg19
Lab
81
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
tissue
liver
42
left cardiac atrium
15
heart left ventricle
9
heart
4
heart right ventricle
4
+ See 4 more…
cell line
HepG2
9
in vitro differentiated cells
hepatocyte
5
primary cell
hepatocyte
2
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