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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
11
ChIP-seq
8
ATAC-seq
3
DNase-seq
1
RRBS
Assay category
56
Transcription
11
DNA accessibility
11
DNA binding
1
DNA methylation
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
8
June, 2019
5
July, 2019
Available data
78
bam
66
bigWig
56
tsv
18
bed narrowPeak
6
bigBed narrowPeak
6
tagAlign
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
79
Homo sapiens
Biosample type
tissue
66
cell line
13
primary cell
in vitro differentiated cells
Organ
485
epithelium
438
pancreas
415
liver
103
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
55
kidney
40
connective tissue
22
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
79
AMP
Genome assembly (visualization)
74
GRCh38
74
hg19
Lab
79
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
biosample_type!
tissue
in vitro differentiated cells
BIOSAMPLE
ASSAY
79 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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