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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ChIP-seq
3
DNase-seq
3
total RNA-seq
1
RRBS
Assay category
5
DNA binding
3
DNA accessibility
3
Transcription
1
DNA methylation
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
8
June, 2019
3
July, 2019
1
May, 2021
Available data
11
bam
9
bigWig
6
bed narrowPeak
6
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
12
Homo sapiens
Biosample type
tissue
11
primary cell
1
in vitro differentiated cells
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
12
AMP
Genome assembly (visualization)
9
GRCh38
9
hg19
Lab
12
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
biosample_type!
tissue
organ_slims!
artery
BIOSAMPLE
ASSAY
12 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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