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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
93
single cell RNA-seq
62
total RNA-seq
43
ATAC-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
94
DNA binding
43
DNA accessibility
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
36
February, 2023
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
5
June, 2019
3
February, 2020
3
May, 2021
Available data
190
bam
163
bigWig
157
tsv
147
bed narrowPeak
94
bigBed narrowPeak
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
298
Homo sapiens
Biosample type
226
tissue
66
cell line
5
primary cell
1
in vitro differentiated cells
Organ
911
pancreas
769
liver
640
connective tissue
492
epithelium
473
adipose tissue
298
heart
265
kidney
236
brain
213
vasculature
210
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
52
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
298
AMP
Genome assembly (visualization)
175
GRCh38
144
hg19
Lab
298
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
July, 2019
BIOSAMPLE
ASSAY
298 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
1
1
1
coronary artery
5
1
35
heart right ventricle
13
17
1
1
1
right cardiac atrium
6
18
1
heart
14
1
2
1
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
in vitro differentiated cells
cardiac fibroblast
1
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