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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
93
single cell RNA-seq
total RNA-seq
47
ATAC-seq
30
DNase-seq
3
Hi-C
3
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
94
DNA binding
94
Transcription
77
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
92
August, 2021
57
April, 2019
36
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
7
July, 2019
6
October, 2019
5
March, 2020
Available data
151
bed narrowPeak
142
bam
115
bigWig
96
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
273
Homo sapiens
Biosample type
251
tissue
14
cell line
8
primary cell
Organ
599
liver
537
pancreas
387
epithelium
290
kidney
273
heart
267
brain
207
connective tissue
173
vasculature
168
blood vessel
114
limb
97
bone element
91
adipose tissue
86
musculature of body
85
artery
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
273
AMP
Genome assembly (visualization)
151
GRCh38
117
hg19
Lab
273
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
files.file_type!
bed bedMethyl
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
273 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
WGBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
1
1
2
coronary artery
5
36
2
heart
14
1
18
1
1
heart right ventricle
13
17
1
1
1
right cardiac atrium
6
18
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
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