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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
93
single cell RNA-seq
75
total RNA-seq
63
DNase-seq
55
ATAC-seq
9
WGBS
4
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
195
DNA binding
169
Transcription
118
DNA accessibility
10
DNA methylation
4
3D chromatin structure
Target of assay
144
histone
144
histone modification
91
broad histone mark
53
narrow histone mark
35
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
76
October, 2019
72
February, 2021
59
June, 2019
57
April, 2019
40
May, 2024
36
February, 2023
28
May, 2019
25
July, 2019
6
February, 2020
5
March, 2020
3
May, 2021
Available data
313
bam
305
bigWig
277
bed narrowPeak
172
bigBed narrowPeak
171
tsv
63
bed bed3+
63
bed broadPeak
63
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
bedpe bed3+
3
hic
Organism
499
Homo sapiens
Biosample type
432
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
775
liver
644
connective tissue
596
pancreas
488
adipose tissue
377
heart
318
kidney
265
brain
198
blood vessel
198
vasculature
158
bone element
139
artery
122
limb
117
epithelium
80
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
499
AMP
Genome assembly (visualization)
352
GRCh38
271
hg19
Lab
459
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe bed3+
biosample_type!
primary cell
BIOSAMPLE
ASSAY
499 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
2
4
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
2
36
tibial nerve
35
5
2
1
heart
14
1
4
18
1
1
+ See 24 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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