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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
60
ChIP-seq
35
ATAC-seq
3
DNase-seq
3
pCHi-C
3
total RNA-seq
2
WGBS
Assay category
96
Transcription
60
DNA binding
38
DNA accessibility
2
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
6
May, 2019
5
June, 2019
3
February, 2020
3
March, 2020
2
February, 2021
2
July, 2019
Available data
98
tsv
78
bed narrowPeak
49
bigWig
29
bam
6
bed bedMethyl
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
199
Homo sapiens
Biosample type
194
tissue
3
primary cell
2
cell line
Organ
284
pancreas
225
kidney
213
epithelium
199
heart
165
liver
122
brain
93
connective tissue
89
bone element
70
blood vessel
70
vasculature
63
adipose tissue
48
artery
27
eye
25
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
199
AMP
Genome assembly (visualization)
260
GRCh38
hg19
Lab
159
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed bedMethyl
assembly!
hg19
BIOSAMPLE
ASSAY
199 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
total RNA-seq
WGBS
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
1
2
heart right ventricle
17
2
1
right cardiac atrium
18
1
1
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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