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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
18
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
35
DNA accessibility
18
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
18
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
June, 2019
1
October, 2019
Available data
145
bam
139
bed narrowPeak
bigWig
116
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
159
Homo sapiens
Biosample type
156
tissue
cell line
3
primary cell
Organ
287
pancreas
216
kidney
194
epithelium
159
heart
114
connective tissue
101
bone element
100
liver
71
vasculature
70
blood vessel
66
adipose tissue
64
brain
55
eye
46
artery
31
limb
28
musculature of body
20
lung
16
skeleton
12
nerve
9
spleen
8
blood
8
bodily fluid
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
159
AMP
Genome assembly (visualization)
35
GRCh38
5
hg19
Lab
159
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
biosample_type!
cell line
BIOSAMPLE
ASSAY
159 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
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primary cell
cardiac fibroblast
2
1
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