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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
49
ATAC-seq
38
ChIP-seq
7
Hi-C
6
total RNA-seq
3
pCHi-C
2
RRBS
2
WGBS
Assay category
99
Transcription
49
DNA accessibility
38
DNA binding
7
3D chromatin structure
4
DNA methylation
Target of assay
37
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
36
February, 2023
18
October, 2019
16
February, 2021
10
April, 2019
8
July, 2019
7
May, 2019
6
February, 2020
5
March, 2020
2
June, 2019
Available data
325
bam
bigWig
243
bed narrowPeak
178
bigBed narrowPeak
175
tsv
66
bed bed3+
66
bed broadPeak
66
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
200
Homo sapiens
Biosample type
187
tissue
10
cell line
3
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
200
AMP
Genome assembly (visualization)
49
GRCh38
19
hg19
Lab
200
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
200 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 21 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
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