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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
48
ATAC-seq
32
DNase-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
117
DNA binding
80
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
80
histone
80
histone modification
51
broad histone mark
29
narrow histone mark
25
control
12
transcription factor
6
RNA binding protein
Date released
57
April, 2019
36
February, 2023
35
June, 2019
32
October, 2019
21
May, 2019
14
February, 2021
14
July, 2019
2
March, 2020
Available data
237
bam
205
bigWig
172
bed narrowPeak
tsv
114
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
211
Homo sapiens
Biosample type
188
tissue
14
cell line
9
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
211
AMP
Genome assembly (visualization)
177
GRCh38
139
hg19
Lab
211
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
211 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
heart
14
18
1
1
1
tibial artery
23
1
2
heart right ventricle
13
1
2
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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