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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
48
ATAC-seq
30
DNase-seq
8
WGBS
8
snATAC-seq
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
154
DNA binding
86
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
63
histone
63
histone modification
63
transcription factor
37
broad histone mark
26
control
26
narrow histone mark
16
RNA binding protein
10
chromatin remodeller
Date released
57
April, 2019
36
February, 2023
35
June, 2019
27
December, 2018
21
May, 2019
18
January, 2019
15
November, 2018
14
February, 2021
14
July, 2019
8
January, 2021
6
October, 2019
2
March, 2020
1
January, 2018
Available data
271
bam
239
bigWig
205
bed narrowPeak
tsv
148
bigBed narrowPeak
60
fastq
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
254
Homo sapiens
Biosample type
162
tissue
75
cell line
17
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
246
AMP
8
T1D
Genome assembly (visualization)
210
GRCh38
173
hg19
Lab
246
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
files.file_type!
tsv
BIOSAMPLE
ASSAY
254 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
snATAC-seq
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
right atrium auricular region
10
1
2
+ See 2 more…
cell line
GM12878
60
1
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
peripheral blood mononuclear cell
8
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