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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
30
DNase-seq
12
ATAC-seq
6
WGBS
Assay category
93
DNA binding
Transcription
42
DNA accessibility
6
DNA methylation
Target of assay
61
histone
61
histone modification
37
broad histone mark
24
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
56
April, 2019
35
June, 2019
21
May, 2019
14
February, 2021
10
July, 2019
5
October, 2019
Available data
151
bed narrowPeak
141
bam
114
bigWig
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
141
Homo sapiens
Biosample type
119
tissue
14
cell line
8
primary cell
Organ
519
liver
277
pancreas
231
brain
171
epithelium
141
heart
132
kidney
127
vasculature
122
blood vessel
119
connective tissue
110
limb
60
blood
60
bodily fluid
51
musculature of body
48
artery
44
adipose tissue
38
nerve
24
spleen
22
embryo
20
vein
18
ureter
8
bone element
8
skeleton
7
eye
1
pituitary gland
Project
141
AMP
Genome assembly (visualization)
121
GRCh38
112
hg19
Lab
141
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
tissue
heart left ventricle
34
3
2
2
heart
14
18
1
heart right ventricle
13
1
2
right atrium auricular region
10
2
1
coronary artery
5
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
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