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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
65
total RNA-seq
27
DNase-seq
12
ATAC-seq
6
WGBS
1
small RNA-seq
Assay category
88
DNA binding
66
Transcription
39
DNA accessibility
6
DNA methylation
Target of assay
59
histone
59
histone modification
37
broad histone mark
22
narrow histone mark
18
control
11
transcription factor
5
RNA binding protein
Date released
66
February, 2021
56
April, 2019
27
June, 2019
21
May, 2019
17
July, 2019
7
October, 2019
3
May, 2021
2
March, 2020
Available data
199
bam
174
bigWig
164
tsv
145
bed narrowPeak
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
199
Homo sapiens
Biosample type
132
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
669
liver
557
connective tissue
495
pancreas
440
adipose tissue
226
brain
199
heart
153
blood vessel
153
vasculature
114
limb
113
kidney
100
artery
75
epithelium
66
bone element
60
blood
60
bodily fluid
44
musculature of body
42
nerve
36
embryo
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
199
AMP
Genome assembly (visualization)
181
GRCh38
173
hg19
Lab
199
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
heart left ventricle
34
3
3
2
2
heart
14
4
18
1
1
heart right ventricle
13
1
1
2
right atrium auricular region
10
2
2
1
coronary artery
5
2
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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