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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
66
total RNA-seq
27
DNase-seq
12
ATAC-seq
6
WGBS
1
small RNA-seq
Assay category
88
DNA binding
67
Transcription
39
DNA accessibility
6
DNA methylation
Target of assay
59
histone
59
histone modification
37
broad histone mark
22
narrow histone mark
18
control
11
transcription factor
5
RNA binding protein
Date released
66
February, 2021
56
April, 2019
27
June, 2019
21
May, 2019
19
July, 2019
7
October, 2019
2
March, 2020
2
May, 2021
Available data
200
bam
175
bigWig
165
tsv
145
bed narrowPeak
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
200
Homo sapiens
Biosample type
132
tissue
66
cell line
2
primary cell
Organ
689
pancreas
681
liver
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
200
AMP
Genome assembly (visualization)
182
GRCh38
174
hg19
Lab
200
AMP-T2D consortium
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
200 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
heart left ventricle
34
3
3
2
2
heart
14
4
18
1
1
heart right ventricle
13
1
1
2
right atrium auricular region
10
2
2
1
coronary artery
5
2
1
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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