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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
28
DNase-seq
15
total RNA-seq
6
WGBS
3
ATAC-seq
1
small RNA-seq
Assay category
67
DNA binding
31
DNA accessibility
16
Transcription
6
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
7
transcription factor
5
RNA binding protein
Date released
47
April, 2019
31
June, 2019
18
July, 2019
12
May, 2019
7
October, 2019
3
May, 2021
2
March, 2020
Available data
135
bam
120
bigWig
113
tsv
98
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
120
Homo sapiens
Biosample type
111
tissue
8
primary cell
1
in vitro differentiated cells
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
120
AMP
Genome assembly (visualization)
119
GRCh38
111
hg19
Lab
120
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
artery
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
small RNA-seq
tissue
heart left ventricle
29
3
3
2
2
heart
12
18
4
1
1
heart right ventricle
11
1
1
2
right atrium auricular region
7
2
2
1
right cardiac atrium
5
1
+ See 3 more…
primary cell
cardiac fibroblast
3
3
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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