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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
83
ChIP-seq
28
DNase-seq
15
total RNA-seq
8
WGBS
3
ATAC-seq
2
RRBS
1
Hi-C
1
small RNA-seq
Assay category
109
Transcription
83
DNA binding
31
DNA accessibility
10
DNA methylation
1
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
57
April, 2019
33
June, 2019
22
July, 2019
16
May, 2019
8
October, 2019
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
133
bam
118
bigWig
108
tsv
98
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
234
Homo sapiens
Biosample type
222
tissue
11
primary cell
1
in vitro differentiated cells
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
352
kidney
346
heart
284
brain
232
vasculature
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
234
AMP
Genome assembly (visualization)
117
GRCh38
112
hg19
Lab
234
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
blood vessel
month_released!
March, 2020
BIOSAMPLE
ASSAY
234 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
RRBS
Hi-C
small RNA-seq
tissue
heart left ventricle
18
35
3
2
4
2
1
heart
1
14
18
4
1
1
1
heart right ventricle
17
13
1
2
right cardiac atrium
18
6
1
left cardiac atrium
18
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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