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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
332
ChIP-seq
93
single cell RNA-seq
54
DNase-seq
43
ATAC-seq
32
total RNA-seq
8
WGBS
5
pCHi-C
5
small RNA-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
332
DNA binding
130
Transcription
98
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
279
histone
279
histone modification
152
narrow histone mark
127
broad histone mark
41
control
12
transcription factor
10
RNA binding protein
Date released
94
October, 2019
92
August, 2021
82
November, 2017
57
April, 2019
52
June, 2019
49
May, 2019
40
May, 2024
37
February, 2023
31
July, 2019
16
October, 2017
15
February, 2020
9
March, 2020
2
May, 2021
2
November, 2018
Available data
365
bed narrowPeak
359
bigWig
358
bam
204
bigBed narrowPeak
134
tsv
118
tagAlign
63
bed broadPeak
54
bed bed3+
54
bigBed broadPeak
12
fastq
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
bed bed3
1
tagAlign bed3+
Organism
578
Homo sapiens
Biosample type
578
tissue
66
cell line
34
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
578
AMP
Genome assembly (visualization)
394
GRCh38
256
hg19
Lab
538
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
bone element
BIOSAMPLE
ASSAY
578 results
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ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
2
36
1
heart
14
1
18
4
1
1
1
brain
20
14
1
1
1
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