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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
56
ChIP-seq
8
WGBS
3
DNase-seq
3
pCHi-C
2
total RNA-seq
Assay category
95
Transcription
56
DNA binding
8
DNA methylation
3
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
16
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
10
April, 2019
8
July, 2019
5
June, 2019
4
May, 2019
3
March, 2020
2
February, 2020
1
February, 2023
Available data
97
tsv
49
bigWig
43
bed narrowPeak
25
bam
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
Organism
165
Homo sapiens
Biosample type
162
tissue
3
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
Genome assembly (visualization)
159
GRCh38
hg19
Lab
125
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
organ_slims!
embryo
artery
assembly!
hg19
BIOSAMPLE
ASSAY
165 results
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single cell RNA-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
tissue
left cardiac atrium
18
40
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
heart
1
2
1
2
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primary cell
cardiac fibroblast
2
1
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