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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
45
ChIP-seq
35
ATAC-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
Assay category
96
Transcription
45
DNA binding
38
DNA accessibility
8
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
36
February, 2023
25
May, 2024
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
3
February, 2020
3
March, 2020
2
February, 2021
Available data
98
tsv
63
bed narrowPeak
34
bigWig
29
bam
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
190
Homo sapiens
Biosample type
185
tissue
3
primary cell
2
cell line
Organ
284
pancreas
225
kidney
212
epithelium
190
heart
158
liver
97
brain
89
bone element
80
connective tissue
70
blood vessel
70
vasculature
55
adipose tissue
48
artery
25
eye
25
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
embryo
4
skeleton
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
190
AMP
Genome assembly (visualization)
227
GRCh38
hg19
Lab
165
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
organ_slims!
embryo
target.investigated_as!
narrow histone mark
assembly!
hg19
BIOSAMPLE
ASSAY
190 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
tissue
left cardiac atrium
18
25
coronary artery
2
35
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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