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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
75
ATAC-seq
34
DNase-seq
14
total RNA-seq
8
WGBS
4
pCHi-C
3
Hi-C
3
RRBS
1
single cell RNA-seq
Assay category
139
DNA binding
109
DNA accessibility
15
Transcription
11
DNA methylation
3
3D chromatin structure
Target of assay
100
histone
100
histone modification
57
broad histone mark
43
narrow histone mark
21
control
18
transcription factor
12
RNA binding protein
Date released
63
February, 2023
57
April, 2019
42
June, 2019
40
May, 2024
27
October, 2019
21
May, 2019
15
July, 2019
14
February, 2021
2
March, 2020
Available data
230
bigWig
224
bed narrowPeak
218
bam
tsv
100
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
281
Homo sapiens
Biosample type
253
tissue
14
cell line
14
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
skin of body
1
thymus
Project
281
AMP
Genome assembly (visualization)
202
GRCh38
152
hg19
Lab
241
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
organ_slims!
skin of body
files.file_type!
tsv
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
1
islet of Langerhans
2
1
14
4
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
retinal pigment epithelial cell
3
1
1
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