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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
48
DNase-seq
47
ATAC-seq
Assay category
114
DNA binding
95
DNA accessibility
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
17
transcription factor
11
RNA binding protein
Date released
51
June, 2019
47
April, 2019
40
May, 2024
35
February, 2023
15
May, 2019
12
February, 2021
5
October, 2019
4
July, 2019
Available data
242
bigWig
229
bam
209
bed narrowPeak
168
tsv
112
bigBed narrowPeak
48
bed bed3+
48
bed broadPeak
48
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
209
Homo sapiens
Biosample type
191
tissue
12
cell line
6
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
209
AMP
Genome assembly (visualization)
208
GRCh38
131
hg19
Lab
169
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
209 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
coronary artery
3
2
36
left cardiac atrium
40
1
heart left ventricle
29
3
2
heart
12
18
heart right ventricle
11
1
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cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
3
3
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