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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
67
ChIP-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
67
DNA binding
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
49
histone
49
histone modification
30
broad histone mark
19
narrow histone mark
12
control
6
transcription factor
4
RNA binding protein
Date released
92
August, 2021
57
April, 2019
33
June, 2019
22
July, 2019
May, 2019
8
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
119
bam
113
tsv
108
bigWig
86
bed narrowPeak
77
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
225
Homo sapiens
Biosample type
213
tissue
11
primary cell
1
in vitro differentiated cells
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
349
kidney
332
heart
258
brain
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
225
AMP
Genome assembly (visualization)
107
GRCh38
104
hg19
Lab
225
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
vasculature
month_released!
May, 2019
BIOSAMPLE
ASSAY
225 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
3
4
2
1
1
1
heart
1
14
18
4
1
1
1
heart right ventricle
17
13
1
1
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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